Create QIIME2 visualizations for training outputs (.qzv)

After training (e.g., output dir my_custom_rf), create these visualizations:

Feature importance

qiime metadata tabulate \
  --m-input-file my_custom_rf/feature_importance.qza \
  --o-visualization my_custom_rf/feature_importance.qzv

Predictions

qiime metadata tabulate \
  --m-input-file my_custom_rf/predictions.qza \
  --o-visualization my_custom_rf/predictions.qzv

Probabilities

qiime metadata tabulate \
  --m-input-file my_custom_rf/probabilities.qza \
  --o-visualization my_custom_rf/probabilities.qzv

Test targets + predictions

qiime metadata tabulate \
  --m-input-file my_custom_rf/test_targets.qza \
  --m-input-file my_custom_rf/predictions.qza \
  --o-visualization my_custom_rf/test_targets_predictions.qzv

Tip: if your output directory has a different name, replace my_custom_rf/ in the commands.

To view .qzv files: